Home > Error In > Error In (function (classes, Fdef, Mtable) In R

Error In (function (classes, Fdef, Mtable) In R


It should work if your file that you imported with read.table() is in the correct format, which it may very well be from your description. It also throws the same error when I call 'Meta(gse)'. Replace your code above with the following. RA  and I ma trying to find overlapping chip seq pea... http://lebloggeek.com/error-in/redefinition-of-function-error-in-c.html

Consider this code: library(microbenchmark) library(GenomicFeatures) library(TxDb.Hs... tapply vs. Am I a victim of age discrimination? What is the recommended way to display the gff files found at uniprot within bioconductor/r If you look up a protein, say IL8, on uniprot, you find you can download the

Error In (function (classes, Fdef, Mtable) In R

kopi-o11-26-2011, 06:42 AMTry to add "row.names=1" to the read.table command. When your mind reviews past events How neutrons interact if not through an electromagnetic interaction? I get the below erro... Affymetrix data double normalisation Hi, I would like to use gcrma to do a within group normalization first (30 groups in total), the...

  • Maximize result of bitwise AND What's a Damn Dorothy Word™?
  • You will be better off looking at the beadarray or lumi packages.
  • However, I have been working on...

more hot questions question feed lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation Content Search Users Tags Badges Help About FAQ Access RSS Stats API Use of this site constitutes acceptance of our User Agreement and Privacy Policy. Using 'tximport' library for downstream DGE after quantifying with Kallisto I'm quite new to RNA-sequencing and am playing around with data to get a handle on it. How to make sure that my operating system is not affected by CVE-2016-5195?

Ilumina data are actually quite different in many respects from Affy data. Thanks a lot, Suprabhath Reddy http://www.nabble.com/file/p16190637/textE_to_affy.csv textE_to_affy.csv -- View this message in context: http://www.nabble.com/Error-in-function-%28classes%2C-fdef%2C-mtable%29%3A-unable-to-find-an-inherited-method-for-function-%22indexProbes%22%2C-for-signature-%22exprSet%22%2C-%22character%22-tp16190637p16190637.html Sent from the R help mailing list archive at Nabble.com. Sign in to comment Contact GitHub API Training Shop Blog About © 2016 GitHub, Inc. Similar posts • Search » VariantAnnotation parallel usage Hi, I'm trying to run a bioconductor variant annotation workflow, similar to that described here ...

I'm not sure what I'm doing wrong here. The header includies the ContigID title, and each sample name, and then each row contains the contig number, and the counts for each sample. What kind of bugs do "goto" statements lead to? GenomicFeatures: Select exons by transcript.

Error In (function (classes Fdef Mtable) Unable To Find An Inherited Method For Function

Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘readHTMLTable’ for signature ‘"NULL"’ In addition: Warning message: XML content does not seem to be XML: For some reason, the... Error In (function (classes, Fdef, Mtable) In R Don't you agree? Unable To Find An Inherited Method For Function ‘dbconnect’ For Signature ‘"character"’ circular figure SSH makes all typed passwords visible when command is provided as an argument to the SSH command more hot questions question feed lang-r about us tour help blog chat

Get 2 lines yanked or 1 line yanked confirmation Americanism "to care SOME about something" Should non-native speakers get extra time to compose exam answers? Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) : I was learning RNA-seq analysis following the RNA-seq workflow: gene-level exploratory analysis a... Is Vrindavan Krishna different from Dvaraka Krishna? "Surprising" examples of Markov chains Scroll a quarter (25%) of the screen up or down Efficiently find whether a string contains a group of Owner joey711 commented Sep 30, 2012 Also, if you had a "phylo" object available and wanted to do something with it in the phyloseq package, chances are it is because you

Can I use my client's GPL software? I just want to be able to get to the point where I can walk through the DESeq vignette on R with my own data. Please let me know. Join them; it only takes a minute: Sign up Getting with errors with ChIPQC - “Error in (function (classes, fdef, mtable)” up vote 0 down vote favorite I am using ChIPQC

Draw an ASCII-O'-Lantern for Halloween Create a Class whose object can not be created Scroll a quarter (25%) of the screen up or down Why would breathing pure oxygen be a of 44 variables: # ....and so on and so forth gse[[1]]@experimentData # Experiment data # Experimenter name: # Laboratory: # Contact information: # Title: # URL: # PMIDs: # No abstract GEOquery Hi, First of all I would like to thank the developers for developing such a useful package!

Previous message: [R] setMethod for "[" Next message: [R] Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character" Messages sorted by:

by vs. I have made the tree with geneious and export it as a nexus file. NA NA NA NA NA NA and head(pr_GR,500000) GRanges with 52445 ranges and 0 elementMetadata values: seqnames ranges strand [1] chr1 [ 9933699, 9934385] * [2] chr1 [ It worked. –Chethan Reddy May 19 '15 at 23:46 add a comment| active oldest votes Know someone who can answer?

Interviewee offered code samples from current employer -- should I accept? Thanks a lot, Suprabhath Reddy microarray normalization ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified 8.6 years ago by Wolfgang Huber ♦ Do you have a tree file somewhere? I would thought that the installation wasn't ok but when I check into my libraries I can see the varriantannotation library What should I do?

Can anyone identify the city in this photo? How do I use this as the count file for DESeq? more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Any idea what I might have done wrong here?