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In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String

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How to make sure that my operating system is not affected by CVE-2016-5195? ADD REPLY • link modified 2.9 years ago • written 2.9 years ago by Michael Dondrup ♦ 39k 2 This error means what it says; the text file is not (tab) For this tab-delimited data, this meant only that some verbatim excerpts of comments from subjects were no longer in quotes which was a non-issue for my data analysis. I already searched for answers, but i don't know where i made a mistake Thanks!! have a peek here

About a man and a bee more hot questions question feed lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology There might be empty spaces/tabsetc at the end of that line. Human vs apes: What advantages do humans have over apes? If this is the case, fill = TRUE is enough to solve your problem.

In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String

What's a Racist Word™? df[-1] <- lapply(df[-1], function(x) as.numeric(sub("[$]", "", x))) df # Type Cash Check Credit Debit Electronic Other Total # 1 Average Number of Purchases 23.7 3.9 10.1 14.4 4.4 2.3 58.7 # The default recognizes anywhite space, e.g.

Line 7 Did Not Have 3 Elements 0 2.9 years ago by silkeverhelle • 10 silkeverhelle • 10 wrote: Hi, i'm trying to normalize my data but i get the following The point of this site is to provide answers for everyone. Powered by Biostar version 2.3.0 Traffic: 1378 users visited in the last hour Host Competitions Datasets Kernels Jobs Community ▾ User Rankings Forum Blog Wiki Sign up Login Log in with R Fill = True It dealswith syntactical R expression (think programming language)./HenrikMy exprsData.txt file looks like this (note this is not the wholespreadsheet)Feature c0M1 c0M2 c0M3 c0M4U179971 -4.7472 -4.43814 -4.3977 -2.97843e1 -0.24565 -0.53124 0.109064 -0.01936e2

Ripley! Error In Read.table Duplicate 'row.names' Are Not Allowed When I use the following script to read in a table of expression data (17,329 rows x 29 columns, tab delimited):exprdata<-read.table("exprsData.txt", header=TRUE)I get the following error message:Error in scan(file, what, nmax, You can use read.csv() whether the file is called something.txt or something.xls or something.csv, as long as the file is ASCII. use argument sep="\t".

Next number in sequence, understand the 1st mistake to avoid the 2nd How neutrons interact if not through an electromagnetic interaction? Error In Scan File What Nmax Sep Dec Quote Skip Nlines Na Strings Scan Expected A Real They're not supposed to! Unix Exit Command SN74LS74AN trouble Numbers at the corners of concentric squares Animate a circle "rolling" along a complicated 3D curve Does the Many Worlds interpretation of quantum mechanics necessarily imply I hope this helps.

Error In Read.table Duplicate 'row.names' Are Not Allowed

This file is of column format - there are in fact 3 columns and 259201 rows (including the column headers). Similar posts • Search » Puzzling Error Message While Working Through A Bioconductor Tutorial On Microarrays I tried recently somme tutorial on microarray data analysis, using either the following link: htt... In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String It's important to the answer to the question –Rich Scriven Oct 25 '14 at 23:32 add a comment| 2 Answers 2 active oldest votes up vote 7 down vote Looks like Error In Read.table More Columns Than Column Names It dealswith syntactical R expression (think programming language)./HenrikMy exprsData.txt file looks like this (note this is not the whole spreadsheet)Feature c0M1 c0M2 c0M3 c0M4U179971 -4.7472 -4.43814 -4.3977 -2.97843e1 -0.24565 -0.53124 0.109064

If I have reached a maximum #, is there a fix?That option has nothing to do with gene expression data. You can do that easily with the command like that: awk -F '\t' '{print $1","$2",\""$3"\","$4}' train.tsv > train.csv That works on mac or linux, on widows you may need cygwin installed. Browse other questions tagged r csv or ask your own question. Does the code terminate? In Scan(file = File, What = What, Sep = Sep, Quote = Quote, Dec = Dec, : Eof Within Quoted String

Am I a victim of age discrimination? "Surprising" examples of Markov chains What's a Damn Dorothy Word™? Sally ----- Original Message ----- From: "Henrik Bengtsson" To: "Sally" Cc: Sent: Monday, January 21, 2008 6:52 PM Subject: Re: [BioC] Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, I installed cmake (3.2.3) ... Not the answer you're looking for?

Get 2 lines yanked or 1 line yanked confirmation Cooking inside a hotel room Why do neural network researchers care about epochs? R Read Table Fill Do you get what you expect?I have also set options([email protected])Have I reached some maximum # of expressions that can be read in, or is it another problem? Log in » Flagging notifies Kaggle that this message is spam, inappropriate, abusive, or violates rules.

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Also, try to read data Henrik Bengtsson at Jan 22, 2008 at 2:52 am ⇧ On Jan 21, 2008 5:24 PM, Sally wrote:I am using limma and am trying to set Thanks #1 | Posted 2 years ago Permalink yati sagade Posts 1 Joined 9 Sep '12 | Email User 0 votes hey it's a little bit late but R can handle Sanjay Bhatikar Hi Sally, I think what this means is you have in your header a label in the 1st position. Read Table Fill True Find all SNPs in linkage disequilibrium   I am trying to expand a set of SNPs (identified by their rsIDs), to include all SNPs in linkag...

If anyone is able to shed some light on why I'm receiving these errors, and how I can get the data into R, then I'd be very grateful to hear them! Join them; it only takes a minute: Sign up Error in reading in data set in R up vote 26 down vote favorite 15 When reading in my data set in Each row only has 3 values (one per column)! How to explain leaving a job for a huge ethical/moral issue to a potential employer - without REALLY explaining it Illegal assignment from List to List circular figure Can anyone identify

Fix this by setting the option quote = "\"" –Stuart Jan 31 '15 at 0:02 add a comment| up vote 1 down vote I encountered this issue while importing some of Convert A Matrix Into A Hash Of Arrays Im trying to convert a big matrix (a tab separated file with different number of elements in each... The default recognizes anywhite space, e.g. Is it safe for a CR2032 coin cell to be in an oven?

A previous solution was to transform .txt files to .csv in Excel, and afterwards open them with read.csv function. How do I import this file? It is only a shorthand to the latter. –Ricardo Cruz Dec 4 '15 at 13:22 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign about • faq • rss Community Log In Sign Up Add New Post Question: R: Error In Scan ...

more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed share|improve this answer edited Nov 25 '15 at 14:35 answered Nov 25 '15 at 14:27 Jose Champsaur 92 Voted down. The file does not have headers. Use read.delim or at least sep="\t".

If I have reached a maximum #, is there a fix?That option has nothing to do with gene expression data. As a final resort I tried 'scan': <- scan("JanuaryAvBurntArea.txt") Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : scan() expected 'a real', got 'Latitude' ...which is obviously I used sep= "\t" to solve the problem. Thank you.

When I use the following script to read in a table of expression data (17,329 rows x 29 columns, tab delimited):exprdata<-read.table("exprsData.txt", header=TRUE)If it is a tab-delimited file, it is safer it Americanism "to care SOME about something" Misuse of parentheses for multiplication Which lane to enter on this roundabout? (UK) Would it be ok to eat rice using spoon in front of Biomart Refseq Data Problem Hello, I want to extract all the mRNA sequence that have RefSeq ID with the coding sequence, and... 450k methylation data: error loading I'm having trouble loading There might be empty spaces/tabs etc at the end of that line.

Therefore we can use the skip argument in read.csv to skip the first 31 lines. more hot questions lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation Science Other Thanks It's work for me:data <- read.csv("data/train.tsv", stringsAsFactors = F, sep = "\t") #3 | Posted 2 years ago Permalink st_sopov Competition 9th Posts 2 Joined 14 Nov '13 | Email