Hessian Covariance Matrix Relation
asked 1 year ago viewed 156 times Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Related 1959Improve INSERT-per-second performance of SQLite?1R error: Error in Hessian in OPTIM when They are powerful tools, but rarely do what you want without some care, like the scaling suggested in one of the comments. nlm() function was considered there but it would be ( with small modifications ) applicable in case of optim() too. Best, Dimitris ---- Dimitris Rizopoulos Ph.D.
The inverse of the hessian is thus an estimate of > the variance-covariance matrix of the parameters. > > For some models this is exactly I/n in your notation, for others Anyway, thanks a lot for your insights. My objective would be to estimate the transmission parameters using a maximum likelihood approach. something > like > > result <- optim(<< snip >>, hessian=T) > result$par # point estimates > vc <- solve(result$hessian) # var-cov matrix
Hessian Covariance Matrix Relation
URL Redirects, When to use Sitecore vs. Hope that helps. -Daniel Jan 16, 2014 Timothée Vergne · Royal Veterinary College Thank you Daniel! r maximum-likelihood share|improve this question edited May 16 '12 at 4:50 asked Apr 24 '12 at 14:24 Etienne Low-Décarie 7431823 2 This question is too vague.
Any help would be much appreciated. As the author of 3 of the codes Brian Ripley incorporated some time ago into optim(), I'm painfully aware of this, and have been striving with some other folk to produce I am using the optim and Rsolonp packages to do so and I am able to obtain the standard errors of my estimated parameters by using the Hessian that these functions Maximum Likelihood Estimation In R Example What's a Racist Word™?
Is that the case or is it a > Hessian that results from the optimization process? > Yes, when it says "numerically differentiated" it means numerically differentiated. Hessian Matrix Confidence Interval Coal and theConservatives Brazil’s Host Advantage Archives December 2015 July 2015 May 2015 June 2014 May 2014 April 2014 February 2014 September 2013 August 2013 June 2013 April 2013 January 2013 http://www.R-project.org/posting-guide.html Dimitris Rizopoulos Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: Hessian from optim() I think it should be the first, To obtain estimated standard errors for the parameters in the constrained space, you could either use the delta method or draw many times from a multivariate normal distribution whose mean vector
Based on my experience thus far, I would recommend the use of maxLik compared to optim. Inverse Hessian Covariance Matrix Usually you have a "curve fitting problem", where model function is complicated enough to be dealt with standard nls()/nlm() tools. How to explain the concept of test automation to a team that only knows manual testing? Not the answer you're looking for?
Hessian Matrix Confidence Interval
Subscribe to R-bloggers to receive e-mails with the latest R posts. (You will not see this message again.) Submit Click here to close (This popup will not appear again) DiffusePrioR Menu Is there anyone to give me some tips? Hessian Covariance Matrix Relation It's not a gauss-newton solver. Hessian Matrix In R up vote 4 down vote favorite 3 I am using maximum-likelihood optimization in Stan, but unfortunately the optimizing() function doesn't report standard errors: > MLb4c <- optimizing(get_stanmodel(fitb4c), data = win.data, init
I have recently become interested in writing my own maximum likelihood estimators. Unity Random.Range not repeat same position How to explain the concept of test automation to a team that only knows manual testing? A comparison of the standard errors, taken from the Hessian matrix, show that the maxLik function once again ‘outperforms’ the optim function, which appears to yield completely incorrect standard errors. > May I recommend: B. Fisher Information Matrix In R
What's the point of Pauli's Exclusion Principle if time and space are continuous? McCullough "Some Details of Nonlinear Estimation," Chapter Eight in Numerical Methods in Statistical Computing for the Social Sciences, Micah Altman, Jeff Gill and Michael P. r optimization share|improve this question edited Dec 18 '14 at 9:52 asked Dec 18 '14 at 0:24 KGeor 404 It sounds like you are doing this the hard way. Though this is an equivalent problem, but here is no length(y) denominator here!
Why use a quasi newton solver if you can stably calculate second derivatives without too much trouble (which is what glm does, and what maxLik does by default). Fisher Information Standard Error McCullough and H. To perform this optimization problem, I use the following two functions: optim, which is part of the stats package, and maxLik, a function from the package of the same name. >
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Do I need to turn off camera before switching auto-focus on/off? In the following, I am assuming that the glm coefficients and standard errors are the (most) correct ones (again, I am happy to be corrected on this). Please try the request again. Fisher Information Hessian Misuse of parentheses for multiplication Setting the target on an internal link field Sum Chain Sequence Draw a $\epsilon$ neighborhood How does a jet's throttle actually work?
What's the temperature in TGVs? The R tools we have are pretty good, but they are in the form of a naked circular saw blade. Generated Wed, 26 Oct 2016 00:27:57 GMT by s_wx1157 (squid/3.5.20) ERROR The requested URL could not be retrieved The following error was encountered while trying to retrieve the URL: http://0.0.0.10/ Connection Firstly, we can see that optim is almost twice the speed of maxLik.
something >> like >> >> result <- optim(<< snip >>, hessian=T) >> result$par # point estimates >> vc <- solve(result$hessian) # var-cov matrix Thomas Lumley and Spencer Graves, Eng.). Join for free An error occurred while rendering template. The data and model I use is one of female labor force participation taken from William H.
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I don't remember whether the two-parameter gamma > family is one where the observed and expected information are identical. It produces objects of class nls which have a summmary(...) method the returns the std errors in the coefficients directly. –jlhoward Dec 18 '14 at 0:39 Incidentally, using parameter If we provide our own symmetric numeric gradient then optim would return the same thing as maxLik in both the example shown here and in our more complex case (dynamic two Sign up today to join our community of over 11+ million scientific professionals.
I don't remember whether the two-parameter >> gamma >> family is one where the observed and expected information are >> identical. > > > > The optim help page says: > Having scaled the age variable, optim, maxLik and glm give the same results up to the third decimal and the NaNs desappear. If I select only a sub-sample of the whole dataset, the sampled epidemic pattern will be completely different from the real one, and the estimation be meaningless. It would be great to compare this to other methods. –Etienne Low-Décarie Apr 26 '12 at 11:34 1 (+1) The inverse of the negative hessian is an estimator of the
Reply diffuseprior May 29, 2012 at 11:16 pm What statements do you refer to?