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R Change Library Path


Within the R console, try: unlink("/Library/Frameworks/R.framework/Versions/3.0/Resources/library/00LOCK-BondLab", recursive = TRUE) Thanks, Kevin Kevin Ushey October 01, 2014 21:35 0 votes Share Facebook Twitter LinkedIn Google+ Permalink Powered by Zendesk Skip to content I have not setup a Rprofile yet, so I am not sure where it is running from. Can the notion of "squaring" be extended to other shapes? Using a default value of: Source This will be fine for almost all users [1] "Attempting to download mgu74av2cdf from http://www.bioconductor.org/data/cd fenvs/repos/" [1] "Download complete." [1] "Installing mgu74av2cdf" mkdir: cannot create

glenn October 01, 2014 15:03 Share Facebook Twitter LinkedIn Google+ Please sign in to leave a comment. Can someone help me solve this problem. Is it safe for a CR2032 coin cell to be in an oven? We recommend upgrading to the latest Safari, Google Chrome, or Firefox.

R Change Library Path

Each user does not need their own installation of every R/Bioconductor package nor their own install of R, but probably should have their own personal library directory for their personal package BioConductor Affy package Hello, I am trying to use BioConductor's affy package, but there must be something wrong with th... asked 2 years ago viewed 1907 times active 2 years ago Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Related 3Error in compiling when installing Stan for R I am not sure why you did not locate it in /Library/Frameworks.

  1. That makes things a whole lot more clearer!
  2. Do you have the appropriate permissions?
  3. The command: install.packages('caTools',lib='~/MyRlibs') will install the specified package in your local directory.
  4. I have thought about chgrping the directory to a new gid and adding Bioconductor users to that group, which may work, but is an ugly kludge.
  5. To explain the '.libPaths()[1]' - .libPaths() is a function that lists, in sequential order, the set of package library directories that the R session knows about.
  6. Already have an account?
  7. So if every user had a directory that they could personally access (e.g. "~/myRlibs") and the R_LIBS set to "~/myRlibs", that should take care of your problems.
  8. Free forum by Nabble Edit this page Jump to navigation University of California, Berkeley Department of Statistics Members:Log in Search form Search this site JavaScript is used to enhance the display
  9. reposTool package: permission problems on liblisting.Rda file Short version: Under Mac OS X and Linux, there is a permissions problem with the library/liblist...

Liviu ______________________________________________ [hidden email] mailing list https://stat.ethz.ch/mailman/listinfo/r-helpPLEASE do read the posting guide http://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code. For a permanent solution, the 'R_LIBS' environment variable can be set - from the help file for .libPaths(): The library search path is initialized at startup from the environment variable 'R_LIBS' which version of it ? Update R That was painless.

Are there any historically significant examples? 00lock R I'd like to install oligo package and got this error. What is strange is that I have rights to write in /home/me/src/Rlibs/. Second, there may have been a temporary network interruption that prevented the download from googlecode or those 404 Not Found messages may just be indicating that there is no rstan_2.0.0.tar.gz in

Animate a circle "rolling" along a complicated 3D curve How to explain the use of high-tech bows instead of guns Efficiently find whether a string contains a group of characters (like Cran R Updates: I uninstalled the all the versions of R and installed the latest version 64 bits R. The lock dir is there to prevent two processes from messing with the same files at the same time, but can remain if an installation terminates prematurely. However, when I removed it using remove.packages() and then tried to reinstall it gave me a directory lock error.

00lock R

That finally seemed to do the trick. can't instal MetaData package "mouse4302" I'm trying to update my copy of the 'mouse4302' annotation package. R Change Library Path When I do a whereis R command, I get the following. Install.packages R This is a modified Linux distro for bioinformatics.

The subset '[1]' says to use the first one in the vector. Bellow is the outcome. A... make: *** [RcppExports.o] Error 1 ERROR: compilation failed for package ‘dplyr’ * removing ‘/usr/local/Cellar/r/3.0.2/R.framework/Versions/3.0/Resources/library/dplyr’ The downloaded source packages are in ‘/private/var/folders/9f/kz67r0rn3qb9tx_rmgbps94r0000gq/T/RtmpJRkIsp/downloaded_packages’ Warning message: In install.packages("dplyr") : installation of package ‘dplyr’ had Install R

What's a Shady Word™? circular figure How to explain leaving a job for a huge ethical/moral issue to a potential employer - without REALLY explaining it more hot questions question feed default about us tour done trying URL 'http://probability.ca/cran/src/contrib/ISwR_2.0-5.tar.gz'Content type 'application/x-gzip' length 157441 bytes (153 Kb) opened URL ================================================== downloaded 153 Kb ERROR: failed to lock directory ‘/home/ubuntu/R/i486-pc-linux-gnu-library/2.9’ for modifying Try removing ‘/home/ubuntu/R/i486-pc-linux-gnu-library/2.9/00LOCK’ The downloaded packages What kind of bugs do "goto" statements lead to?

Using multiple custom meta data keyword Criteria in a single query as LIKE operators Create a Class whose object can not be created Numbers at the corners of concentric squares (part Ggplot2 Everytime I try to i... Failed loading Biobase Hi I installed R-devel-leopard.pkg (56Mb, installer incl.

But it does not work. –Stella Hu May 6 '14 at 21:32 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign up using Google

Suppose there is a directory called MyRlibs in your home directory. Bellow is the outcome. The default is '.libPaths()[1]', which if a user doesn't do anything special is (always, I think) going to point to /path/to/R/library - and in a situation like you're describing with a R Studio install.packages("RODBC","/home/rama/R/i486-pc-linux-gnu-library/2.9") and I get back an error which says: ERROR: failed to lock directory ‘/home/rama/R/i486-pc-linux-gnu-library/2.9’ for modifying Try removing ‘/home/rama/R/i486-pc-linux-gnu-library/2.9/00LOCK’ The downloaded packages are in ‘/tmp/RtmpkzDMVU/downloaded_packages’ Warning message: In install.packages("RODBC", "/home/rama/R/i486-pc-linux-gnu-library/2.9")

writing of /usr/lib/R New to the list, first post! This variable should be set to a colon-separated string of directories to search. You might try to update your locate database and use that to search for a file named 00LOCK. Content Search Users Tags Badges Help About FAQ Access RSS Stats API Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Bioconductor was installed via getBioC with R running as a root equivalent user. Not the answer you're looking for? To access it, the lib.loc= argument of library must be used: library('caTools',lib='~/MyRlibs') One problem with this scheme is that if a local library invokes the library() function, it won't know to more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed

RODBC needs development headers for an ODBC library and all that -- again, for Debian / Ubuntu you just say sudo apt-get install r-cran-rodbc.