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R Error In Plot.new Could Not Open File

I am guessing that you are working your way through this code: http://www.bioconductor.org/help/publications/books/bioinformatics-and-computational-biology-solutions/chapter-code/TwoColorPre.R This uses packages which are obsolete so it's not surprising that you are getting errors. MacDonald wrote: > I don't remember if Macs come ready to do png graphics or not, and a quick > google doesn't clear it up for me. Hope my answer is helpful. –fishfish311 Jun 1 '13 at 14:41 add a comment| 2 Answers 2 active oldest votes up vote 0 down vote Try this code :- c.eval("dev.off()") share|improve Is there an adverb meaning "by volunteering"? http://lebloggeek.com/r-error/r-error-reading-portable-file-dictionary.html

bitmap() extremely slow! MacDonald wrote: > I don't remember if Macs come ready to do png graphics or not, and a quick > google doesn't clear it up for me. If the same problem occurs without using RStudio, the error is related to R or the R code. Many thanks in advance.

Anything? I'm eager to see your response. Do not use flagging to indicate you disagree with an opinion or to hide a post. The presence of this folder seems to help in my case, but I don't know (yet!) what that folder is.

If not, you can set the > dev argument of maQualityPlots() to a device for which you have > capabilities. arrayQualityMetrics error Hi everyone We just got a new HPC system to speed up our analysis, but we are having some proble... I have an identical system according to sessionInfo() but no problem... I use R-2.15.0 and Rserve-1.7.0 in linux server side.

In R semantics, the successive plot() will output figure to the active device opened by the "pdf(...)" function, i.e. "plots.pdf" this time. gene.strip exonmap hi members, i have some questions for the function gene.strip() from package exonmap. Jokes about Monica's haircut DDoS: Why not block originating IP addresses? Does anyone know how to fix this problem?

However, I got a... MacDonald, M.S. When I tried to... more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed

Is it okay to send my professor humorous material? The function maQua... share|improve this answer edited Jul 11 at 18:15 answered Jan 13 at 18:54 Hello World 123 528210 Thanks for accepting this answer. Try typing > > capabilities() > > at an R prompt and see if there is a TRUE under png.

vennSelect error Dear list I am trying to use affycoretools for the analysis of affy yeast arrays. This is a dedicated region for plots inside the IDE. NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line Dear Bioconductor List, I am processing Affymetrix Mouse ST1.0 Gene chips with oligo. Start Watching « Back to forum © 2016 Kaggle Inc Our Team Careers Terms Privacy Contact/Support sign up / log in • about • faq • rss Ask Question Latest

Not the answer you're looking for? If you have multiple graphics devices open, repeat this command until the output displays null device. Use the default interface installed with R such as RGui, R.app, or terminal R. Barry -- blog: http://geospaced.blogspot.com/web: http://www.maths.lancs.ac.uk/~rowlingsweb: http://www.rowlingson.com/twitter: http://twitter.com/geospacedmanpics: http://www.flickr.com/photos/spacedman______________________________________________ [hidden email] mailing list https://stat.ethz.ch/mailman/listinfo/r-helpPLEASE do read the posting guide http://www.R-project.org/posting-guide.htmland provide commented, minimal, self-contained, reproducible code.

Join them; it only takes a minute: Sign up Plot() error when using REngine.Rserve up vote 2 down vote favorite 1 I'm now work on a project which wants to use R will automatically size your graphic to fit inside this region. I have a particular problem that when I run the following code in C# client side: c.eval("pdf(file=\"plots.pdf\", width=11, height=8.5)"); c.eval("plot(1,2)"); An error occour which said Error in plot.new():cannot open file '',

Does the code terminate? "Surprising" examples of Markov chains Draw an ASCII-O'-Lantern for Halloween When a girl mentions her girlfriend, does she mean it like lesbian girlfriend?

  • x-axis ticks are misaligned in ggbio tracks I'm trying to make a gene model plot using the ggbio tracks function.
  • Does anyone know how to fix this problem?
  • If there is a TRUE under png, then you will need to furnish > the actual code you are running (or better yet, a reproducible example, > which implies that I
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  • MacDonald ♦ 41k On Thu, Jan 3, 2013 at 8:37 AM, James W.
  • Join them; it only takes a minute: Sign up Error in plot.new() when creating PDF in R up vote 0 down vote favorite When plotting a dendrogram in R, I get

Peter « Return to R help | 1 view|%1 views Loading... Run R with --vanilla from the command line: R --vanilla and see if it still fails. In general, png is supported on the mac. > So the first step I would take is to > ensure that you have the capability to do so. However, sometimes in production it fails.

When I do autoplot alone, i... Related answer at Cannot open file '', reason No such file or directory suggests using file.path as a alternative to paste for creating filenames with platform-independent path separators. Word for making your life circumstances seem much worse than they are Words that are anagrams of themselves How to get the last monday of every month Does the local network When I ran the code maQualityPlots(beta7) in Chapter 4 of Bioinformatics and Computational Biology Solutions Using R and Bioconductor, I got the mesasge "Error in plot.new() : could not open file

So far I was unable to replicate this. r plot rserve share|improve this question edited May 29 '13 at 9:39 asked May 28 '13 at 18:04 Datageek 7,42632631 The evidence piles up to suggest it is a oligo package - Unable to read HT-U133A CEL files Hi Benilton, I?m using the oligo package to try to read CEL files from the Affymetrix HT-U133A p... I create this folder at the start of my session and I'm good to go.

To reset your graphics device, call the following code from the console: > dev.off() Note: This will delete your current plots in the RStudio Plots Pane. Does anyone know how to fix this problem? Misuse of parentheses for multiplication Efficiently find whether a string contains a group of characters (like substring but ignoring order)? Try typing > > capabilities() > > at an R prompt and see if there is a TRUE under png.

Can anyone identify the city in this photo? For example: > plot(cars) > par(mfrow=c(2,2)) > plot(cars) To fix this behavior, sometimes it is best to reset your graphics device and then try your plot again. Thanks a lot! -- output of sessionInfo(): R version 2.15.1 (2012-06-22) Platform: x86_64-redhat-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] But I'm very confused that why the error indicated that the file is ''.

Forgot your Username / Password? The difference is that dev.close() closes the current device, graphics.off() closes all open devices. Error: could not find function "readGVF" I am trying to use the 'readGVF' function but it seems to be inexistent.   > library("cnvGSA... Any idea what it means?

Words that are anagrams of themselves The ambiguous "he is buried" Can I only touch other creatures with spells such as Invisibility? The presence of this folder seems to help in my case.